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03/03: gnu: trim-galore: Update to 0.6.1.
From: |
guix-commits |
Subject: |
03/03: gnu: trim-galore: Update to 0.6.1. |
Date: |
Tue, 26 Mar 2019 11:40:55 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit fdc316f3741e2f4174235e1828d62552da7559d4
Author: Ricardo Wurmus <address@hidden>
Date: Tue Mar 26 16:40:18 2019 +0100
gnu: trim-galore: Update to 0.6.1.
* gnu/packages/bioinformatics.scm (trim-galore): Update to 0.6.1.
[arguments]: Adjust patching.
---
gnu/packages/bioinformatics.scm | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 87f15fc..4e799f2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10880,17 +10880,17 @@ with narrow binding events such as transcription
factor ChIP-seq.")
(define-public trim-galore
(package
(name "trim-galore")
- (version "0.4.5")
+ (version "0.6.1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/FelixKrueger/TrimGalore.git")
(commit version)))
- (file-name (string-append name "-" version "-checkout"))
+ (file-name (git-file-name name version))
(sha256
(base32
- "0x5892l48c816pf00wmnz5vq0zq6170d3xc8zrxncd4jcz7h1p71"))))
+ "1y31wbxwkm9xqzr5zv1pk5q418whnmlmgmfyxxpnl12h83m2i9iv"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; no tests
@@ -10905,10 +10905,10 @@ with narrow binding events such as transcription
factor ChIP-seq.")
(string-append "$path_to_cutadapt = '"
(assoc-ref inputs "cutadapt")
"/bin/cutadapt'"))
- (("\\| gzip")
- (string-append "| "
+ (("\\$compression_path = \"gzip\"")
+ (string-append "$compression_path = \""
(assoc-ref inputs "gzip")
- "/bin/gzip"))
+ "/bin/gzip\""))
(("\"gunzip")
(string-append "\""
(assoc-ref inputs "gzip")