02/03: gnu: Add r-dnacopy.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit c18dccffa20bf09826758210d457d1df477f959c
Author: Ricardo Wurmus <address@hidden>
Date:   Tue Feb 12 13:07:15 2019 +0100

    gnu: Add r-dnacopy.
    
    * gnu/packages/bioconductor.scm (r-dnacopy): New variable.
---
 gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 20aabb0..9057158 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -27,6 +27,7 @@
   #:use-module (gnu packages bioinformatics)
   #:use-module (gnu packages cran)
   #:use-module (gnu packages compression)
+  #:use-module (gnu packages gcc)
   #:use-module (gnu packages graph)
   #:use-module (gnu packages maths)
   #:use-module (gnu packages statistics)
@@ -1176,3 +1177,25 @@ Viewer (SAV) files, access data, and generate QC plots.")
      "This package provides a quality control pipeline for ChIP-exo/nexus
 sequencing data.")
     (license license:gpl2+)))
+
+(define-public r-dnacopy
+  (package
+    (name "r-dnacopy")
+    (version "1.56.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "DNAcopy" version))
+       (sha256
+        (base32
+         "04cqdqxhva66xwh1s2vffi56b9fcrqd4slcrvqasj5lp2rkjli82"))))
+    (properties `((upstream-name . "DNAcopy")))
+    (build-system r-build-system)
+    (native-inputs `(("gfortran" ,gfortran)))
+    (home-page "https://bioconductor.org/packages/DNAcopy";)
+    (synopsis "DNA copy number data analysis")
+    (description
+     "This package implements the @dfn{circular binary segmentation} (CBS)
+algorithm to segment DNA copy number data and identify genomic regions with
+abnormal copy number.")
+    (license license:gpl2+)))