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02/05: gnu: ncbi-vdb: Fetch sources from git.
From: |
Ricardo Wurmus |
Subject: |
02/05: gnu: ncbi-vdb: Fetch sources from git. |
Date: |
Thu, 8 Nov 2018 02:54:05 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 3398dfb764f309ad4d0cace5c80ae4c6b69b12f6
Author: Ricardo Wurmus <address@hidden>
Date: Thu Nov 8 08:34:01 2018 +0100
gnu: ncbi-vdb: Fetch sources from git.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[source]: Fetch from git.
[arguments]: Add phase to make checkout writable.
---
gnu/packages/bioinformatics.scm | 21 +++++++++++----------
1 file changed, 11 insertions(+), 10 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bbdecbf..6ef4adb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5303,22 +5303,23 @@ simultaneously.")
(package
(name "ncbi-vdb")
(version "2.8.2")
- (source
- (origin
- (method url-fetch)
- (uri
- (string-append "https://github.com/ncbi/ncbi-vdb/archive/"
- version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32
- "1acn4bv81mfl137qnbn9995mjjhwd36pm0b7qli1iw5skrxa9j8m"))))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/ncbi/ncbi-vdb.git")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1ssy5wlqdm86pmbv9mfdjx518lbsk32wfv2qgr7m1z77kaicw7zq"))))
(build-system gnu-build-system)
(arguments
`(#:parallel-build? #f ; not supported
#:tests? #f ; no "check" target
#:phases
(modify-phases %standard-phases
+ (add-after 'unpack 'make-files-writable
+ (lambda _ (for-each make-file-writable (find-files "." ".*")) #t))
(add-before 'configure 'set-perl-search-path
(lambda _
;; Work around "dotless @INC" build failure.