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147/151: gnu: r-rcas: Update to 1.8.0.
From: |
Ricardo Wurmus |
Subject: |
147/151: gnu: r-rcas: Update to 1.8.0. |
Date: |
Wed, 7 Nov 2018 06:29:03 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit a1c2bf8e54cac0d805f71e5f46a38b2d6ee364bb
Author: Ricardo Wurmus <address@hidden>
Date: Wed Nov 7 12:22:08 2018 +0100
gnu: r-rcas: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.8.0.
[native-inputs]: Remove r-testthat and ghc-pandoc-citeproc.
[propagated-inputs]: Add r-annotationdbi, r-genomeinfodb, and
r-genomicranges;
remove r-bsgenome-mmusculus-ucsc-mm9, r-bsgenome-celegans-ucsc-ce10,
r-bsgenome-dmelanogaster-ucsc-dm3, r-org-ce-eg-db, r-org-dm-eg-db, and
r-org-mm-eg-db.
---
gnu/packages/bioinformatics.scm | 20 ++++++--------------
1 file changed, 6 insertions(+), 14 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index dc09316..e439979 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8641,41 +8641,33 @@ paired-end data.")
(define-public r-rcas
(package
(name "r-rcas")
- (version "1.6.0")
+ (version "1.8.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "RCAS" version))
(sha256
(base32
- "0vmn7a0rm2ban0kaxrf5danhss2r4hfhnwh5889fjcgqy300fdd5"))))
+ "0ss5hcg2m7gjji6dd23zxa5bd5a7knwcnada4qs5q2l4clgk39ad"))))
(build-system r-build-system)
- (native-inputs
- `(("r-testthat" ,r-testthat)
- ;; During vignette building knitr checks that "pandoc-citeproc"
- ;; is in the PATH.
- ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc)))
(propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biocgenerics" ,r-biocgenerics)
("r-biomart" ,r-biomart)
("r-biostrings" ,r-biostrings)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
- ("r-bsgenome-mmusculus-ucsc-mm9" ,r-bsgenome-mmusculus-ucsc-mm9)
- ("r-bsgenome-celegans-ucsc-ce10" ,r-bsgenome-celegans-ucsc-ce10)
- ("r-bsgenome-dmelanogaster-ucsc-dm3" ,r-bsgenome-dmelanogaster-ucsc-dm3)
("r-cowplot" ,r-cowplot)
("r-data-table" ,r-data-table)
("r-dbi" ,r-dbi)
("r-dt" ,r-dt)
("r-genomation" ,r-genomation)
+ ("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-ggseqlogo" ,r-ggseqlogo)
("r-knitr" ,r-knitr)
("r-motifrg" ,r-motifrg)
("r-org-hs-eg-db" ,r-org-hs-eg-db)
- ("r-org-ce-eg-db" ,r-org-ce-eg-db)
- ("r-org-dm-eg-db" ,r-org-dm-eg-db)
- ("r-org-mm-eg-db" ,r-org-mm-eg-db)
("r-pbapply" ,r-pbapply)
("r-pheatmap" ,r-pheatmap)
("r-plotly" ,r-plotly)
- 92/151: gnu: r-bsgenome: Update to 1.50.0., (continued)
- 92/151: gnu: r-bsgenome: Update to 1.50.0., Ricardo Wurmus, 2018/11/07
- 97/151: gnu: r-motifrg: Update to 1.26.0., Ricardo Wurmus, 2018/11/07
- 90/151: gnu: r-genomicfeatures: Update to 1.34.1., Ricardo Wurmus, 2018/11/07
- 109/151: gnu: r-affyio: Update to 1.52.0., Ricardo Wurmus, 2018/11/07
- 123/151: gnu: r-gage: Update to 2.32.0., Ricardo Wurmus, 2018/11/07
- 135/151: gnu: r-gqtlstats: Update to 1.14.0., Ricardo Wurmus, 2018/11/07
- 122/151: gnu: r-keggrest: Update to 1.22.0., Ricardo Wurmus, 2018/11/07
- 138/151: gnu: r-sushi: Update to 1.20.0., Ricardo Wurmus, 2018/11/07
- 118/151: gnu: r-edaseq: Update to 2.16.0., Ricardo Wurmus, 2018/11/07
- 108/151: gnu: r-protgenerics: Update to 1.14.0., Ricardo Wurmus, 2018/11/07
- 147/151: gnu: r-rcas: Update to 1.8.0.,
Ricardo Wurmus <=
- 80/151: gnu: r-biobase: Update to 2.42.0., Ricardo Wurmus, 2018/11/07
- 48/151: gnu: r-dt: Update to 0.5., Ricardo Wurmus, 2018/11/07
- 47/151: gnu: r-roxygen2: Update to 6.1.1., Ricardo Wurmus, 2018/11/07
- 64/151: gnu: r-systempiper: Update to 1.16.0., Ricardo Wurmus, 2018/11/07
- 79/151: gnu: r-genomicranges: Update to 1.34.0., Ricardo Wurmus, 2018/11/07
- 73/151: gnu: r-iranges: Update to 2.16.0., Ricardo Wurmus, 2018/11/07
- 75/151: gnu: r-edger: Update to 3.24.0., Ricardo Wurmus, 2018/11/07
- 100/151: gnu: r-bamsignals: Update to 1.14.0., Ricardo Wurmus, 2018/11/07
- 88/151: gnu: r-genomicalignments: Update to 1.18.0., Ricardo Wurmus, 2018/11/07
- 95/151: gnu: r-genomation: Update to 1.14.0., Ricardo Wurmus, 2018/11/07