branch staging updated (d0ab3c3 -> 8692508)

[Marius Bakke]

mbakke pushed a change to branch staging
in repository guix.

      from  d0ab3c3   gnu: mesa: Update to 18.1.5.
       new  f419abe   gnu: openblas: Update to 0.3.2.
      adds  6219685   gnu: clojure: Fix index generation.
      adds  4262a49   gnu: address@hidden: Update to 4.4.145.
      adds  8b30bc8   gnu: address@hidden: Update to 4.9.116.
      adds  c85a76c   gnu: address@hidden: Update to 4.14.59.
      adds  f8e2df9   gnu: linux-libre: Update to 4.17.11.
      adds  10d5315   gnu: Add chroma.
      adds  5d5a02d   gnu: Add python-fastalite.
      adds  19601e8   gnu: python2-psycopg2: Update to 2.7.5.
      adds  9e0c135   gnu: python-dendropy: Update to 4.4.0.
      adds  3f8c82e   gnu: taxtastic: Add missing propagated-inputs.
      adds  b90d97e   ssh: Display the size of the store items being sent.
      adds  5b68239   services: openssh: Add forwarding options.
      adds  d2a1cf4   linux-initrd: Improve check of initrd modules.
      adds  fcd068e   linux-initrd: Try several file names when looking up 
modules.
      adds  99b78ba   linux-initrd: Report only missing modules, not all needed 
modules.
      adds  26b8cd1   gnu: Remove duplicated emacs-csv-mode.
      adds  d493d59   gnu: Remove duplicated emacs-load-relative.
      adds  cfa6cc4   gnu: Remove duplicated r-psych package.
      adds  89b4882   gnu: Remove duplicated ghc-th-lift-instances.
      adds  f694b4b   gnu: Remove duplicated ghc-time-locale-compat.
      adds  3b4b666   gnu: Remove duplicated perl-extutils-depends.
      adds  6465497   gnu: Remove duplicated python-pafy.
      adds  077d66e   gnu: mcrl2: Build with modular qt.
      adds  136ff9a   gnu: monero: Use git-file-name.
      adds  398a96a   gnu: monero-gui: Use git-file-name.
      adds  c6b60d3   gnu: libqmatrixclient: Don't use unstable tarball.
      adds  6f066db   gnu: quaternion: Don't use unstable tarball.
      adds  9febf39   gnu: libqmatrixclient: Build with modular qt.
      adds  2973989   gnu: quaternion: Build with modular qt.
      adds  42531fd   gnu: Add python-docker-pycreds.
      adds  1911078   gnu: Add python-pyperclip.
      adds  c3f9a6c   gnu: Add python-codecov.
      adds  2b1e80d   gnu: Add python-androguard.
      adds  b23b966   gnu: virtualization.scm: Use license prefix.
      adds  5e95181   gnu: Add python-vagrant.
      adds  b24da11   gnu: python-docker-py: Update to 1.10.6.
      adds  76e206e   gnu: Add fdroidserver.
      adds  3729767   gnu: make-u-boot-package: Add missing module.
      adds  4266df5   gnu: libwps: Update to 0.4.9.
      adds  1743172   gnu: libreoffice: Fix build with newer GLM.
      adds  253340d   gnu: agda: Compile .agda files.
      adds  1237653   gnu: Add emacs-agda2-mode
      adds  7802215   gnu: cuirass: Update to 99241ef.
      adds  0c85d2c   gnu: youtube-dl: Update to 2018.07.29.
      adds  6915d20   gnu: monero-gui: Build with modular qt.
      adds  5416e40   gnu: tig: Update to 2.4.1.
      adds  1121a5c   gnu: openssh: Update home-page.
      adds  de596e99  gnu: parallel: Update to 20180722.
      adds  f475b90   gnu: warzone2100: Update to 3.2.3.
       new  8692508   Merge branch 'master' into staging

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 doc/guix.texi                                      |   9 ++
 gnu/build/linux-modules.scm                        |  36 +++++++
 gnu/local.mk                                       |   2 +-
 gnu/packages/agda.scm                              |  30 ++++++
 gnu/packages/android.scm                           | 106 ++++++++++++++++++++-
 gnu/packages/bioinformatics.scm                    |  59 ++++++++----
 gnu/packages/bootloaders.scm                       |   5 +-
 gnu/packages/check.scm                             |  26 ++++-
 gnu/packages/ci.scm                                |   4 +-
 gnu/packages/cran.scm                              |  35 +------
 gnu/packages/databases.scm                         |   9 +-
 gnu/packages/docker.scm                            |  43 ++++++++-
 gnu/packages/emacs.scm                             |  46 ---------
 gnu/packages/finance.scm                           |  41 ++++++--
 gnu/packages/games.scm                             |  60 +++++++++---
 gnu/packages/haskell.scm                           |  45 ---------
 gnu/packages/java.scm                              |   5 +
 gnu/packages/libreoffice.scm                       |   7 +-
 gnu/packages/linux.scm                             |  16 ++--
 gnu/packages/maths.scm                             |   6 +-
 gnu/packages/messaging.scm                         |  29 +++---
 gnu/packages/parallel.scm                          |   6 +-
 gnu/packages/patches/libreoffice-glm.patch         |  58 +++++++++++
 .../patches/python-dendropy-fix-tests.patch        |  41 --------
 gnu/packages/perl.scm                              |  24 -----
 gnu/packages/python.scm                            |  24 -----
 gnu/packages/ssh.scm                               |   4 +-
 gnu/packages/version-control.scm                   |   6 +-
 gnu/packages/video.scm                             |   5 +-
 gnu/packages/virtualization.scm                    |  53 +++++++----
 gnu/packages/xdisorg.scm                           |  26 ++++-
 gnu/services/ssh.scm                               |  22 +++++
 gnu/system/linux-initrd.scm                        |  26 +----
 gnu/system/mapped-devices.scm                      |  29 +++---
 guix/ssh.scm                                       |  11 ++-
 35 files changed, 598 insertions(+), 356 deletions(-)
 create mode 100644 gnu/packages/patches/libreoffice-glm.patch
 delete mode 100644 gnu/packages/patches/python-dendropy-fix-tests.patch