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01/01: gnu: bismark: Patch bismark2report before installing.
From: |
Ricardo Wurmus |
Subject: |
01/01: gnu: bismark: Patch bismark2report before installing. |
Date: |
Tue, 22 May 2018 10:06:55 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 0f5ad3a1bcdc20062ee3966296c5dcb99d0be6e9
Author: Ricardo Wurmus <address@hidden>
Date: Tue May 22 16:05:41 2018 +0200
gnu: bismark: Patch bismark2report before installing.
* gnu/packages/bioinformatics.scm (bismark)[arguments]: Patch file before
installing it.
---
gnu/packages/bioinformatics.scm | 7 +++----
1 file changed, 3 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a6d28be..17b7366 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11624,6 +11624,9 @@ Browser.")
"filter_non_conversion"
"bam2nuc"
"bismark2summary")))
+ (substitute* "bismark2report"
+ (("\\$RealBin/bismark_sitrep")
+ (string-append share "/bismark_sitrep")))
(mkdir-p share)
(mkdir-p docdir)
(mkdir-p bin)
@@ -11632,10 +11635,6 @@ Browser.")
(for-each (lambda (file) (install-file file docdir))
docs)
(copy-recursively "Docs/Images" (string-append docdir
"/Images"))
-
- (substitute* "bismark2report"
- (("\\$RealBin/bismark_sitrep")
- (string-append share "/bismark_sitrep")))
(copy-recursively "bismark_sitrep"
(string-append share "/bismark_sitrep"))