branch core-updates updated (24ee3b2 -> f76fc96)

[Leo Famulari]

lfam pushed a change to branch core-updates
in repository guix.

      from  24ee3b2   gnu: perl-libtime-parsedate: Comment out 
#:disallowed-references.
      adds  86300e6   gnu: address@hidden: Update to 4.4.106.
      adds  48e1f44   gnu: address@hidden: Update to 4.9.70.
      adds  7a6a08c   gnu: linux-libre: Update to 4.14.7.
      adds  4498cbd   gnu: GnuPG pinentry: Update to 1.1.0.
      adds  4fad659   gnu: keepassxc: Update to 2.2.4.
      adds  4a408d8   gnu: mpd: Update to 0.20.13.
      adds  a1ac7bf   tests: Adjust php-fpm test to new nginx API.
      adds  28fc96c   gnu: Update r-cowplot to 0.9.2.
      adds  ba1ba9f   gnu: emulation-station: Add missing file-name field.
      adds  fb6ca49   gnu: Update gwl to 0.1.1.
      adds  b28e05d   gnu: antiword: Fix broken embedded directory name.
      adds  79b43bc   gnu: pcsc-lite: Update to 1.8.23.
      adds  21bc352   gnu: dino: Update to 0.0-3.f25fadde2.
      adds  f3b985f   gnu: python-nbxmpp: Update to 0.6.1.
      adds  0464dc1   gnu: gajim: Update to 0.16.9.
      adds  7a070f0   gnu: Add quakespasm.
      adds  a8db968   gnu: wxmaxima: Update to 17.10.1.
      adds  9a56cf2   services: urandom-seed: Try using a HWRNG to seed the 
Linux CRNG at boot.
      adds  68f1869   gnu: xfce4-session: Disable (duplicate) Gtk+ icon cache 
generation.
      adds  618f058   upstream: Reject bogus archive type guesses.
      adds  8d11ef4   gnu: r-vegan: Update to 2.4-5.
      adds  756ac72   gnu: r-dexseq: Update to 1.24.2.
      adds  7665fb3   gnu: r-biocstyle: Update to 2.6.1.
      adds  ab0dd8a   gnu: r-edger: Update to 3.20.2.
      adds  d41f678   gnu: r-limma: Update to 3.34.4.
      adds  28d25d0   gnu: r-rtracklayer: Update to 1.38.2.
      adds  2ccd850   gnu: r-gqtlstats: Update to 1.10.1.
      adds  11e4220   gnu: r-gviz: Update to 1.22.2.
      adds  b9e8a5c   gnu: r-biomart: Update to 2.34.1.
      adds  f46a74e   gnu: r-proxy: Update to 0.4-20.
      adds  2960f96   gnu: r-vcd: Update to 1.4-4.
      adds  d0c1a40   gnu: r-digest: Update to 0.6.13.
      adds  de3fd92   gnu: r-reshape2: Update to 1.4.3.
      adds  1028f9e   gnu: r-yaml: Update to 2.1.16.
      adds  069e3b5   gnu: r-backports: Update to 1.1.2.
      adds  004e108   gnu: r-git2r: Update to 0.20.0.
      adds  0300cac   gnu: r-plotrix: Update to 3.7.
      adds  102a271   gnu: r-rcpparmadillo: Update to 0.8.300.1.0.
      adds  0a1b447   gnu: r-rprojroot: Update to 1.3-1.
      adds  4a1945d   gnu: r-segmented: Update to 0.5-3.0.
      adds  d2dc69b   gnu: r-iterators: Update to 1.0.9.
      adds  83b0e1d   gnu: r-registry: Update to 0.5.
      adds  f9f1291   gnu: r-ade4: Update to 1.7-10.
      adds  5378f38   gnu: r-curl: Update to 3.1.
      adds  02cdb45   gnu: Add r-truncnorm.
      adds  cb8b4c1   gnu: Add r-rsolnp.
      adds  d039494   gnu: r-hardyweinberg: Update to 1.5.9.
      adds  2976f30   gnu: Add r-cli.
      adds  aead9e1   gnu: r-testthat: Update to 2.0.0.
      adds  57ae890   gnu: r-htmltable: Update to 1.11.0.
      adds  74c96b0   gnu: webkitgtk: Update to 2.18.4 [fixes 
CVE-2017-{7156,13856,13866,13870}].
      adds  afcbc34   gnu: babl: Update to 0.1.38.
      adds  09a91ad   gnu: libressl: Update to 2.6.4.
      adds  8bc6956   gnu: rng-tools: Update to 6.1.
      adds  48a9654   gnu: exim: Update to 4.90.
      adds  5965b08   gnu: libassuan: Update to 2.5.1.
      adds  e6f6341   gnu: python-pygpgme: Use GnuPG 1 for the test suite.
      adds  0e06bec   gnu: gpgme: Build with the latest GnuPG.
      adds  4305176   gnu: microscheme: Fix home page.
      adds  770635e   gnu: address@hidden: Update to 4.4.107.
      adds  0786e4b   gnu: address@hidden: Update to 4.9.71.
      adds  66df43b   gnu: linux-libre: Update to 4.14.8.
      adds  dacd8cf   gnu: links: Fix-CVE-2017-11114.
      adds  fa79a90   gnu: Add perl-test-requiresinternet.
      adds  91213c3   gnu: weechat: Update to 2.0.1.
      adds  dab2542   gnu: mupdf: Update to 1.12.0 [fixes CVE-2017-15369].
      adds  417f3d4   gnu: xboing: Fix CVE-2004-0149.
      adds  ce16d31   gnu: libexif: Fix CVE-2017-7544.
      adds  c521c8f   gnu: Add python-tempdir.
      adds  2a0e3d1   gnu: libarchive: Fix CVE-2017-14502.
      adds  0c9c952   gnu: libxslt: Fix CVE-2017-5029 and re-apply the fix for 
CVE-2016-4738.
      adds  806e891   gnu: address@hidden: Superseded by the latest GnuPG.
      adds  5308f15   gnu: zstd: Update to 1.3.3.
      adds  f45e314   gnu: zstd: Disable unrelated format support.
      adds  00840ee   gnu: weechat: Run tests.
      adds  382e5f1   gnu: gnupg: Update to 2.2.4.
      adds  5dc0e0b   gnu: imagemagick: Update to 6.9.9-27.
       new  f76fc96   Merge branch 'master' into core-updates

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 doc/guix.texi                                      |   4 +-
 gnu/local.mk                                       |  10 +-
 gnu/packages/avr.scm                               |   2 +-
 gnu/packages/backup.scm                            |   3 +-
 gnu/packages/bioinformatics.scm                    |  37 +++---
 gnu/packages/compression.scm                       |  12 +-
 gnu/packages/cran.scm                              |  80 ++++++++++--
 gnu/packages/games.scm                             |  48 +++++++-
 gnu/packages/gimp.scm                              |   4 +-
 gnu/packages/gnupg.scm                             |  31 +++--
 gnu/packages/imagemagick.scm                       |   4 +-
 gnu/packages/irc.scm                               |  44 +++++--
 gnu/packages/linux.scm                             |  36 ++++--
 gnu/packages/mail.scm                              |   4 +-
 gnu/packages/maths.scm                             |   4 +-
 gnu/packages/messaging.scm                         |  14 +--
 gnu/packages/mpd.scm                               |   4 +-
 gnu/packages/package-management.scm                |   4 +-
 gnu/packages/password-utils.scm                    |   4 +-
 .../patches/libarchive-CVE-2017-14502.patch        |  40 ++++++
 gnu/packages/patches/libexif-CVE-2017-7544.patch   |  29 +++++
 gnu/packages/patches/links-CVE-2017-11114.patch    |  99 +++++++++++++++
 gnu/packages/patches/mupdf-CVE-2017-14685.patch    |  34 ------
 gnu/packages/patches/mupdf-CVE-2017-14686.patch    |  34 ------
 gnu/packages/patches/mupdf-CVE-2017-14687.patch    | 130 --------------------
 gnu/packages/patches/mupdf-CVE-2017-15587.patch    |  25 ----
 ...atch => mupdf-build-with-latest-openjpeg.patch} |   8 +-
 gnu/packages/patches/xboing-CVE-2004-0149.patch    | 134 +++++++++++++++++++++
 gnu/packages/pdf.scm                               |  13 +-
 gnu/packages/perl-check.scm                        |  24 ++++
 gnu/packages/photo.scm                             |   2 +
 gnu/packages/python.scm                            |  27 +++++
 gnu/packages/security-token.scm                    |   1 +
 gnu/packages/statistics.scm                        |  65 +++++-----
 gnu/packages/textutils.scm                         |   9 +-
 gnu/packages/tls.scm                               |   4 +-
 gnu/packages/web-browsers.scm                      |   1 +
 gnu/packages/web.scm                               |  14 ++-
 gnu/packages/webkit.scm                            |   4 +-
 gnu/packages/xfce.scm                              |   5 +-
 gnu/packages/xml.scm                               |   9 ++
 gnu/services/base.scm                              |  18 +++
 gnu/tests/web.scm                                  |   2 +-
 guix/upstream.scm                                  |   8 +-
 44 files changed, 716 insertions(+), 372 deletions(-)
 create mode 100644 gnu/packages/patches/libarchive-CVE-2017-14502.patch
 create mode 100644 gnu/packages/patches/libexif-CVE-2017-7544.patch
 create mode 100644 gnu/packages/patches/links-CVE-2017-11114.patch
 delete mode 100644 gnu/packages/patches/mupdf-CVE-2017-14685.patch
 delete mode 100644 gnu/packages/patches/mupdf-CVE-2017-14686.patch
 delete mode 100644 gnu/packages/patches/mupdf-CVE-2017-14687.patch
 delete mode 100644 gnu/packages/patches/mupdf-CVE-2017-15587.patch
 rename gnu/packages/patches/{mupdf-build-with-openjpeg-2.1.patch => 
mupdf-build-with-latest-openjpeg.patch} (69%)
 create mode 100644 gnu/packages/patches/xboing-CVE-2004-0149.patch