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02/39: gnu: Add r-annotationhub.
From: |
Ricardo Wurmus |
Subject: |
02/39: gnu: Add r-annotationhub. |
Date: |
Thu, 17 Aug 2017 11:27:32 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 4a007ffafe8b348425a6c89159b4364b08ed5765
Author: Ricardo Wurmus <address@hidden>
Date: Mon Aug 14 17:48:58 2017 +0200
gnu: Add r-annotationhub.
* gnu/packages/bioinformatics.scm (r-annotationhub): New variable.
---
gnu/packages/bioinformatics.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2def6a2..56f2d5d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9255,6 +9255,40 @@ global-scaling and full-quantile normalization.")
Shiny-based display methods for Bioconductor objects.")
(license license:artistic2.0)))
+(define-public r-annotationhub
+ (package
+ (name "r-annotationhub")
+ (version "2.8.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AnnotationHub" version))
+ (sha256
+ (base32
+ "1nh5si3j1nv37jcg4260582ayjg18851np47cskrm54prnvhwd9r"))))
+ (properties `((upstream-name . "AnnotationHub")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocinstaller" ,r-biocinstaller)
+ ("r-httr" ,r-httr)
+ ("r-interactivedisplaybase" ,r-interactivedisplaybase)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-yaml" ,r-yaml)))
+ (home-page "http://bioconductor.org/packages/AnnotationHub")
+ (synopsis "Client to access AnnotationHub resources")
+ (description
+ "This package provides a client for the Bioconductor AnnotationHub web
+resource. The AnnotationHub web resource provides a central location where
+genomic files (e.g. VCF, bed, wig) and other resources from standard
+locations (e.g. UCSC, Ensembl) can be discovered. The resource includes
+metadata about each resource, e.g., a textual description, tags, and date of
+modification. The client creates and manages a local cache of files retrieved
+by the user, helping with quick and reproducible access.")
+ (license license:artistic2.0)))
+
(define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package
- branch master updated (a71fd67 -> 05e8a3e), Ricardo Wurmus, 2017/08/17
- 12/39: gnu: Add r-getoptlong., Ricardo Wurmus, 2017/08/17
- 01/39: gnu: Add r-interactivedisplaybase., Ricardo Wurmus, 2017/08/17
- 02/39: gnu: Add r-annotationhub.,
Ricardo Wurmus <=
- 06/39: gnu: Add r-globaloptions., Ricardo Wurmus, 2017/08/17
- 09/39: gnu: Add r-png., Ricardo Wurmus, 2017/08/17
- 11/39: gnu: Add r-dendextend., Ricardo Wurmus, 2017/08/17
- 14/39: gnu: Add r-ff., Ricardo Wurmus, 2017/08/17
- 15/39: gnu: Add r-ffbase., Ricardo Wurmus, 2017/08/17
- 24/39: gnu: Add r-lmoments., Ricardo Wurmus, 2017/08/17
- 18/39: gnu: Add r-progress., Ricardo Wurmus, 2017/08/17
- 20/39: gnu: Add r-proxy., Ricardo Wurmus, 2017/08/17
- 30/39: gnu: r-trimcluster: Update license., Ricardo Wurmus, 2017/08/17
- 26/39: gnu: Add r-extremes., Ricardo Wurmus, 2017/08/17