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branch staging updated (51ec40b -> 66e1244)


From: Ludovic Courtès
Subject: branch staging updated (51ec40b -> 66e1244)
Date: Wed, 4 Jan 2017 22:29:55 +0000 (UTC)

civodul pushed a change to branch staging
in repository guix.

      from  51ec40b   gnu: nss: Fix build failure caused by expired test 
certificate.
      adds  9f74424   gnu: xf86-video-qxl: Update to 0.1.5.
      adds  b2f1f7b   gnu: emacs-guix: Update to 0.2.1.
      adds  fb222fb   gnu: Add perl-cddb-get.
      adds  328398e   gnu: Add ripit.
      adds  f1775db   gnu: ruby-minitest: Update to 5.10.1.
      adds  c976b31   gnu: python-stem: Update to 1.5.3.
      adds  9916ef8   gnu: diamond: Update to 0.8.30.
      adds  9142624   gnu: awesome: Update to 4.0.
      adds  4de2a71   gnu: python-stem: Don't use python-pycrypto.
      adds  1194575   gnu: python-pycrypto: Add TODO "removal" comment.
      adds  2c8d6c0   gnu: r-rcas: Update to 1.1.1.
      adds  ea8450c   gnu: Add python-netcdf4.
      adds  9e6c7c4   gnu: Add httpstat.
      adds  d531b9f   gnu: emacs-org: Update to 20161224.
      adds  4dbaa12   gnu: wireshark: Update to 2.2.3.
      adds  48dc9f3   gnu: znc: Update to 1.6.4.
      adds  517c320   gnu: rofi: Update to 1.3.0.
      adds  1d9c889   gnu: glibc-hurd: Update to 2.23.
      adds  ffb1e98   gnu: python-babel: Update to 2.3.4.
      adds  2ee5734   gnu: python-numexpr: Update to 2.6.1.
      adds  791ac6a   gnu: python-markdown: Update to 2.6.7.
      adds  6a34f4c   gnu: python-prompt-toolkit: Update to 1.0.9.
      adds  50f7da2   gnu: xonsh: Update to 0.5.1.
      adds  a7ad802   gnu: Add python-flask-wtf.
      adds  a2c7d88   gnu: Add python-flask-multistatic.
      adds  9f21414   gnu: Add python-kitchen.
      adds  460fccd   gnu: Add python-munch.
      adds  0151a8d   gnu: Add python-pygit2.
      adds  3ef00f5   gnu: Add python2-openid.
      adds  0370217   gnu: Add python-openid-cla.
      adds  a0e41de   gnu: Add python-openid-teams.
      adds  789de5e   gnu: Add python-straight-plugin.
      adds  d5bbf80   gnu: Add python-trollius-redis.
      adds  43c0b9b   gnu: perl-zip: Update to 1.59.
      adds  e7b9da2   gnu: mu: Update to 0.9.18.
      adds  e62e975   gnu: mu: Avoid bootstrapping.
      adds  b954256   gnu: rustc: Update to 1.14.0.
      adds  d835c6c   gnu: mpd: Update to 0.19.21.
      adds  36225d4   import: elpa: Fix call-with-downloaded-file
      adds  681a555   import: elpa: Import dependencies as propagated-inputs
      adds  8ecc3c6   daemon: Allow fixed-output derivation builds with TMPDIR 
set.
      adds  322e724   gnu: libpng: Fix a null pointer dereference [fixes 
security issue].
      adds  fc604ed   gnu: libpng-1.2: Update to 1.2.57 [security update].
      adds  0695813   gnu: Add r-vipor.
      adds  6ba2798   gnu: Add r-beeswarm.
      adds  649d0c4   gnu: Add r-sourcetools.
      adds  2943041   gnu: Add r-ggbeeswarm.
      adds  2fd261a   gnu: Add r-statmod.
      adds  94a6f20   gnu: r-colorspace: Update to 1.3-2.
      adds  deb6276   Remove Emacs interface.
      adds  d312215   gnu: r-servr: Update to 0.5.
      adds  f4ca28d   gnu: r-curl: Update to 2.3.
      adds  c616810   gnu: r-htmlwidgets: Update to 0.8.
      adds  9cdf10f   gnu: r-yaml: Update to 2.1.14.
      adds  eebac90   gnu: r-rcpp: Update to 0.12.8.
      adds  58b93ad   gnu: r-estimability: Update to 1.2.
      adds  76ce7c3   gnu: r-data-table: Update to 1.10.0.
      adds  773a501   gnu: r-sparsem: Update to 1.74.
      adds  db1b38a   gnu: r-xml: Update to 3.98-1.5.
      adds  abb6f05   gnu: r-ade4: Update to 1.7-5
      adds  85455a0   gnu: r-git2r: Update to 0.17.0.
      adds  2a1c1b8   gnu: r-hms: Update to 0.3.
      adds  421f777   gnu: r-qtl: Update to 1.40-8.
      adds  8a8fc31   gnu: r-mgcv: Update to 1.8-16.
      adds  b94b03b   gnu: r-scales: Update to 0.4.1.
      adds  ab01f1c   gnu: r-ggplot2: Update to 2.2.0.
      adds  48a87bb   gnu: r-gdtools: Update to 0.1.3.
      adds  dd4ae29   gnu: r-svglite: Update to 1.2.0.
      adds  fd7810d   gnu: r-bh: Update to 1.62.0-1.
      adds  eaec550   gnu: r-knitr: Update to 1.15.1.
      adds  3607afb   gnu: r-chron: Update to 2.3-48.
      adds  62350c0   gnu: r-coda: Update to 0.19-1.
      adds  1a44753   gnu: r-r-utils: Update to 2.5.0.
      adds  54aa6eb   gnu: r-r-rsp: Update to 0.40.0.
      adds  3a181dc   gnu: r-plotly: Update to 4.5.6.
      adds  53941eb   gnu: r-fastcluster: Update to 1.1.22.
      adds  c729d3d   gnu: r-zoo: Update to 1.7-14.
      adds  b1c1f4d   gnu: armadillo: Update to 7.600.2.
      adds  a8e45b3   gnu: r-rcpparmadillo: Update to 0.7.600.1.0.
      adds  046e27e   gnu: Add r-rprojroot.
      adds  ca380fe   gnu: r-rmarkdown: Update to 1.3.
      adds  0811f0f   gnu: Add r-base64.
      adds  ab60706   gnu: r-hmisc: Update to 4.0-1.
      adds  28c041a   gnu: Add r-plogr.
      adds  35bb2ff   gnu: r-rsqlite: Update to 1.1-1.
      adds  a57495e   gnu: khard: Update to 0.11.3.
      adds  d0f0579   gnu: r-annotate: Update to 1.52.1.
      adds  007ee80   gnu: r-deseq2: Update to 1.14.1.
      adds  c8ad8b6   gnu: r-biocstyle: Update to 2.2.1.
      adds  86fc9c4   gnu: r-s4vectors: Update to 0.12.1.
      adds  54d9b56   gnu: r-iranges: Update to 2.8.1.
      adds  81a17b6   gnu: r-genomeinfodb: Update to 1.10.1.
      adds  5d3acc0   gnu: r-edger: Update to 3.16.5.
      adds  5796af9   gnu: r-variantannotation: Update to 1.20.2.
      adds  72c2693   gnu: r-limma: Update to 3.30.7.
      adds  2f642e5   gnu: r-biostrings: Update to 2.42.1.
      adds  76b6438   gnu: r-genomicfeatures: Update to 1.26.2.
      adds  87b5209   gnu: mpd: Install systemd service files.
      adds  3547a5e   services: Add libmtp's udev rules to '%desktop-services'.
      adds  95d7d0c   gnu: elogind: Enable ACL support.
      adds  a29929b   gnu: multiqc: Update to 0.9.
      adds  4037e5f   gnu: address@hidden: Update to 4.1.37.
      adds  6023041   import: crate: Do not build when guile-json is not 
available.
      adds  858b9af   gnu: libpng: Mention CVE-2016-10087.
      adds  68415aa   gnu: libtermkey: Update to 0.19.
      adds  987a29b   Add (guix ssh) module.
      adds  0f39106   gnu: pius: Update to 2.2.2-0.891687c.
      adds  da62a4a   gnu: mc: Partially fix absolute file paths.
      adds  a3a2774   hydra: Remove 'qemu-image' job.
      adds  c055a37   gnu: tiled: Update to 0.18.0.
      adds  7d2e758   gnu: python-pygments: Update to 2.1.3.
      adds  bf5e4bc   gnu: python-pyyaml: Update to 3.12.
      adds  a5f92ca   gnu: python-pytz: Update to 2016.10.
      adds  594358f   gnu: python2-fastlmm: Update to 0.2.26.
      adds  45cc957   gnu: python-jupyter-core: Update to 4.2.1.
      adds  f165648   gnu: python-ipykernel: Update to 4.5.2.
      adds  ae476d0   gnu: python-ndg-httpsclient: Update to 0.4.2.
      adds  42734b9   gnu: python-click-log: Update to 0.1.8.
      adds  ab0c342   gnu: python-pyquery: Update to 1.2.17.
      adds  234ade2   gnu: python-ply: Update to 3.9.
      adds  0c315fb   gnu: python-freezegun: Update to 0.3.8.
      adds  b13a5b4   gnu: python-graphql-relay: Update to 0.4.5.
      adds  c0b2d08   git-download: Use a single download script for all 
derivations.
      adds  e9629e8   ssh: Allow transfers of complete closures.
      adds  23973e4   ssh: 'send-files' returns the list of items sent.
      adds  13164a2   ssh: 'retrieve-files' detects remote export failures.
      adds  f11c444   Add 'guix copy'.
      adds  7fc2d37   gnu: nagios: Update to 4.2.4 [fixes CVE-2016-{9565,9566}].
      adds  322a583   gnu: diamond: Update to 0.8.31.
      adds  25d84d3   gnu: python-dendropy: Update to 4.2.0.
      adds  c50dc71   gnu: manaplus: Update to 1.6.12.24.
      adds  6f7bcaa   Update .mailmap.
      adds  636c77d   gnu: clisp: Use modify-phases syntax.
      adds  c26ba57   gnu: clisp: Remove timestamps.
      adds  6f5b1c9   gnu: Add dummy linker for propeller-elf.
      adds  2d7c921   gnu: Add propeller-binutils.
      adds  68cb278   gnu: Add propeller-gcc.
      adds  0d0079b   gnu: Add proplib.
      adds  eb88fba   gnu: Add propeller-toolchain.
      adds  150e0a1   gnu: Add openspin.
      adds  c6b96af   gnu: Add propeller-load.
      adds  0a7860c   gnu: Add spin2cpp.
      adds  3ebc86d   gnu: Add spinsim.
      adds  395bbfd   gnu: Add propeller-development-suite.
      adds  dc77498   build-system: cargo: Make Cargo.toml writeable.
      adds  f53a551   import: crate: Provide a default home-page value.
      adds  f1d1369   build-system: cargo: Handle Cargo.lock file not present.
      adds  e63b19f   gnu: mysql: Update to 5.7.17.
      adds  ed88dd4   gnu: mariadb: Update to 10.1.20.
      adds  5dbeccf   gnu: diffoscope: Embed tool references.
      adds  7be13d0   gnu: python-ndg-httpsclient: Use pypi-uri.
      adds  4a6e889   gexp: Properly report substitution errors.
      adds  5e2e4a5   gexp: Support 'ungexp' forms in improper lists.
      adds  fef494d   gnu-maintenance: Update ViewVC URLs.
      adds  8de938d   services: cuirass: Allow for gexps in specifications.
      adds  231eddc   services: cuirass: Remove 'cuirass-service' procedure.
      adds  a6e0ae4   syscalls: 'terminal-columns' swallows ENOSYS.
      adds  74d862e   ui: It's 2017 now!
      adds  abdd28e   gnu: Add xdot.
      adds  f90f6b6   gnu: yosys: Add xdot functionality.
      adds  9a93f57   gnu: yosys: Update to 0.7.
      adds  2e161ea   gnu: python-pyicu: Update to 1.9.5.
      adds  27ccefc   gnu: beets: Update to 1.4.2.
      adds  0d48ff8   gnu: beets: Build with Python 3.
      adds  5043b20   gnu: python-pycparser: Update to 2.17.
      adds  819939c   gnu: python-pycparser: Use ‘modify-phases’ syntax.
      adds  d79fa7d   gnu: python-decorator: Update to 4.0.10.
      adds  27f9148   gnu: python-backports-abc: Update to 0.5.
      adds  bbb99d6   gnu: python-werkzeug: Update to 0.11.15.
      adds  af27e84   gnu: awscli: Update to 1.11.35.
      adds  3753f2e   gnu: python-mako: Update to 1.0.6.
      adds  1f89fb1   gnu: python-greenlet: Update to 0.4.11.
      adds  1b5ea09   gnu: python-s3transfer: Update to 0.1.10.
      adds  9af0762   gnu: gfortran: Remove non-'eq?' duplicate of 
address@hidden
      adds  7355634   gnu: Disambiguate packages with the same name.
      adds  1a49a10   gnu: fftw: Factorize creation of the --enable-threads 
variant.
      adds  eeb05e8   guix hash: '-x' excludes '.git' even when it is a regular 
file.
      adds  4b50daa   gnu: jasper: Update to 2.0.10.
      adds  68b3627   gnu: address@hidden: Update to 2.8.10.
      adds  8d2de49   gnu: openvpn: Update to 2.3.14.
      adds  832d60d   gnu: mpv: Update to 0.23.0.
      adds  125e3cd   gnu: connman: Add dependency on polkit.
      adds  5819431   gnu: Add cmst.
      adds  d925cdc   ui: Keep the word "Copyright" untranslated.
      adds  b3e2ea8   gnu: Add sonic.
      adds  47932c0   gnu: lynx: Update to 2.8.9dev.11 [fixes CVE-2016-9179].
      adds  6155186   gnu: gimp: Enable PDF support
      adds  b1251a2   gnu: arc-theme: Update to 20161119.
      adds  4fb14fa   gnu: sudo: Update to 1.8.19p1.
      adds  ac370a3   gnu: r-genomeinfodb: Update to 1.10.2.
      adds  407a280   gnu: r-genomicranges: Update to 1.26.2.
      adds  da13738   gnu: r-ggplot2: Update to 2.2.1.
      adds  596fcfa   gnu: r-jsonlite: Update to 1.2.
      adds  437d064   gnu: r-openssl: Update to 0.9.6.
      adds  807db78   gnu: r-hmisc: Update to 4.0-2.
      adds  0c74399   gnu: r-git2r: Update to 0.18.0.
      adds  7b030c9   gnu: r-plotrix: Update to 3.6-4.
      adds  3b9b12e   services: nginx: Rename "vhost" to "server".
      adds  4e9ae30   services: nginx: Fix multiple index and server name.
      adds  d338237   services: nginx: Make service extensible.
      adds  b9b6db4   gnu: chicken: Update to 4.11.1.
      adds  6a37872   gnu: chicken: Fix CVE-2016-{6830,6831}.
      adds  62596a1   gnu: Use hurd-triplet? to check if GNU/Hurd.
      adds  367f701   gnu: glibc-hurd: Disable werror.
      adds  484437b   guix: build: make-bootstrap: Copy libpthread_nonshared.a 
to the new system.
      adds  e2c3037   gnu: pcsc-lite: Update to 1.8.20 [fixes CVE-2016-10109].
      adds  70c6341   gnu: Add Zile-on-Guile.
      adds  4d0a3d8   system: grub: Load relevant EFI modules on EFI systems.
      adds  9e0f16f   gnu: gpgme: Update to 1.8.0.
      adds  e3dd1f0   gnu: Add python-gpg.
      adds  e871c33   gnu: python2-xdo: Update to 0.3.
      adds  7637de2   gnu: Add python-xdo.
      adds  f339f27   gnu: assword: Update to 0.10.
      adds  ea5cc29   gnu: supertux: Update to 0.5.1.
      adds  0916dc5   gnu: Add emacs-git-gutter
      adds  3b3b60d   gnu: Use HTTPS for all sourceforge.net home pages.
      adds  02dadd3   gnu: nano: Update to 2.7.3.
      adds  0b2a91d   gnu: global: Update to 6.5.6.
      adds  835d371   gnu: parallel: Update to 20161222.
      adds  3b40213   gnu: Add wimlib.
      adds  8efd807   gnu: trash-cli: Update to 0.17.1.1.
      adds  f3a53f3   gnu: slock: Update to 1.4.
      adds  bc47382   gnu: dmenu: Update to 4.6.
      adds  648733d   gnu: dwm: Update to 6.1.
      adds  eb5378f   gnu: bs1770gain: Update to 0.4.12.
      adds  f7e9f1c   gnu: feh: Update to 2.18.
      adds  37e8a2e   gnu: calibre: Update to 2.76.0.
      adds  324f4fc   gnu: mcrypt: Fix patches for CVE-2012-{4409,4527}.
      adds  2d2388e   gnu: Add ghc-language-c.
      adds  b5a0964   gnu: Add cargo.
      adds  3b7ccbe   build-system: cargo: Use correct cargo.
      adds  de793e9   gnu: ghc-language-c: Fix up.
      adds  9b4ec57   doc: Change wording for "--with-graft".
      adds  ee17a9e   git-download: Add some helpers.
      adds  c0d5b64   gnu: Order module imports in (gnu packages haskell) 
alphabetically.
      adds  c7a7129   gnu: idris: Update to 0.99.
      adds  ae482ce   gnu: idris: Move to (gnu packages idris).
      adds  ea3b38f   gnu: Add idris-lightyear.
      adds  4e17fff   gnu: Add idris-wl-pprint.
      adds  5a16d82   gnu: Add idris-bifunctors.
      adds  3254e1a   gnu: Add idris-lens.
      adds  d8e0a08   gnu: Use 'license:' prefix in (gnu packages ocaml).
      adds  1ff755d   gnu: Reorder imports in (gnu packages ocaml).
      adds  8bd10c1   gnu: ocaml: Add a .file directive to generated .s files.
      adds  796a17a   gnu: ocaml: Add CAML_LD_LIBRARY_PATH search-path.
      adds  2b1f7b8   gnu: ocaml: Fix indentation.
      adds  e0ddaa8   gnu: camlp4: Compile native version.
      adds  e6876cb   gnu: Add ocaml-build-system.
      adds  56f73ea   gnu: ocaml: Use a helper function to download from 
ocaml-forge.
      adds  ad3d730   gnu: camlp4: Install camlp4 META file.
      adds  7a76b4a   gnu: Add ocaml-ounit.
      adds  bc2c3bc   gnu: Add camlzip.
      adds  93eeadf   gnu: Add ocamlmod.
      adds  ddf2b50   gnu: Add ocaml-zarith.
      adds  d38bc9a   grafts: Move caching to a new 'with-cache' macro.
      adds  a614ce3   gnu: Add Guile-Bash.
      adds  b96a064   graph: Add '%reverse-package-node-type'.
       new  66e1244   Merge branch 'master' into staging

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .mailmap                                           |   22 +-
 Makefile.am                                        |   22 +-
 build-aux/hydra/demo-os.scm                        |   84 --
 build-aux/hydra/gnu-system.scm                     |   15 +-
 configure.ac                                       |   15 +-
 doc/contributing.texi                              |    3 -
 doc/emacs.texi                                     |  881 ---------------
 doc/guix.texi                                      |  243 ++--
 doc/htmlxref.cnf                                   |    2 +
 emacs/guix-about.el                                |   37 -
 emacs/guix-backend.el                              |  393 -------
 emacs/guix-base.el                                 |  377 -------
 emacs/guix-buffer.el                               |  624 ----------
 emacs/guix-build-log.el                            |  381 -------
 emacs/guix-command.el                              |  830 --------------
 emacs/guix-config.el.in                            |   44 -
 emacs/guix-devel.el                                |  382 -------
 emacs/guix-entry.el                                |   59 -
 emacs/guix-external.el                             |   88 --
 emacs/guix-geiser.el                               |  126 ---
 emacs/guix-guile.el                                |   98 --
 emacs/guix-help-vars.el                            |  108 --
 emacs/guix-helper.scm.in                           |   65 --
 emacs/guix-history.el                              |   92 --
 emacs/guix-hydra-build.el                          |  362 ------
 emacs/guix-hydra-jobset.el                         |  162 ---
 emacs/guix-hydra.el                                |  367 ------
 emacs/guix-info.el                                 |  482 --------
 emacs/guix-init.el                                 |    3 -
 emacs/guix-license.el                              |   65 --
 emacs/guix-list.el                                 |  585 ----------
 emacs/guix-location.el                             |   79 --
 emacs/guix-main.scm                                | 1163 -------------------
 emacs/guix-messages.el                             |  247 ----
 emacs/guix-pcomplete.el                            |  370 ------
 emacs/guix-popup.el                                |   48 -
 emacs/guix-prettify.el                             |  210 ----
 emacs/guix-profiles.el                             |   77 --
 emacs/guix-read.el                                 |  147 ---
 emacs/guix-ui-generation.el                        |  456 --------
 emacs/guix-ui-license.el                           |  150 ---
 emacs/guix-ui-location.el                          |   83 --
 emacs/guix-ui-package.el                           | 1191 --------------------
 emacs/guix-ui-system-generation.el                 |  105 --
 emacs/guix-ui.el                                   |  323 ------
 emacs/guix-utils.el                                |  609 ----------
 emacs/local.mk                                     |   77 --
 gnu/local.mk                                       |    7 +-
 gnu/packages/admin.scm                             |   10 +-
 gnu/packages/algebra.scm                           |   21 +-
 gnu/packages/audio.scm                             |   10 +-
 gnu/packages/backup.scm                            |   35 +
 gnu/packages/base.scm                              |    9 +-
 gnu/packages/bioinformatics.scm                    |   91 +-
 gnu/packages/bootstrap.scm                         |    1 +
 gnu/packages/cdrom.scm                             |   40 +
 gnu/packages/code.scm                              |    4 +-
 gnu/packages/commencement.scm                      |    4 +-
 gnu/packages/connman.scm                           |   47 +-
 gnu/packages/cross-base.scm                        |    2 +-
 gnu/packages/databases.scm                         |    8 +-
 gnu/packages/display-managers.scm                  |    2 +-
 gnu/packages/ebook.scm                             |    6 +-
 gnu/packages/emacs.scm                             |   42 +-
 gnu/packages/embedded.scm                          |  352 +++++-
 gnu/packages/fpga.scm                              |   18 +-
 gnu/packages/freedesktop.scm                       |    3 +-
 gnu/packages/game-development.scm                  |    4 +-
 gnu/packages/games.scm                             |   10 +-
 gnu/packages/gcc.scm                               |    9 +-
 gnu/packages/ghostscript.scm                       |    2 +-
 gnu/packages/gimp.scm                              |    2 +
 gnu/packages/gnome.scm                             |    4 +-
 gnu/packages/gnupg.scm                             |  106 +-
 gnu/packages/graphviz.scm                          |   50 +-
 gnu/packages/guile.scm                             |   72 +-
 gnu/packages/haskell.scm                           |  146 +--
 gnu/packages/hurd.scm                              |    7 +-
 gnu/packages/idris.scm                             |  256 +++++
 gnu/packages/image-viewers.scm                     |    5 +-
 gnu/packages/image.scm                             |   22 +-
 gnu/packages/libreoffice.scm                       |    8 +-
 gnu/packages/linux.scm                             |   12 +-
 gnu/packages/lisp.scm                              |   42 +-
 gnu/packages/llvm.scm                              |    3 +-
 gnu/packages/lynx.scm                              |    4 +-
 gnu/packages/mail.scm                              |   48 +-
 gnu/packages/make-bootstrap.scm                    |    4 -
 gnu/packages/maths.scm                             |    8 +-
 gnu/packages/mc.scm                                |   14 +-
 gnu/packages/messaging.scm                         |    4 +-
 gnu/packages/monitoring.scm                        |   15 +-
 gnu/packages/mp3.scm                               |    2 +-
 gnu/packages/mpd.scm                               |   15 +-
 gnu/packages/music.scm                             |   48 +-
 gnu/packages/nano.scm                              |    4 +-
 gnu/packages/networking.scm                        |   40 +-
 gnu/packages/ocaml.scm                             |  315 ++++--
 gnu/packages/onc-rpc.scm                           |    2 +-
 gnu/packages/package-management.scm                |   29 +-
 gnu/packages/parallel.scm                          |    4 +-
 gnu/packages/password-utils.scm                    |   22 +-
 .../patches/awesome-reproducible-png.patch         |    4 +-
 .../chicken-CVE-2016-6830+CVE-2016-6831.patch      |   81 ++
 gnu/packages/patches/libpng-CVE-2016-10087.patch   |   37 +
 gnu/packages/patches/mcrypt-CVE-2012-4409.patch    |   35 +-
 gnu/packages/patches/mcrypt-CVE-2012-4527.patch    |  198 ++--
 .../patches/multiqc-fix-git-subprocess-error.patch |   16 +
 .../patches/ocaml-Add-a-.file-directive.patch      |   96 ++
 .../python-dendropy-exclude-failing-tests.patch    |   21 -
 gnu/packages/patches/slock-CVE-2016-6866.patch     |   51 -
 gnu/packages/perl.scm                              |   21 +-
 gnu/packages/python.scm                            |  471 ++++++--
 gnu/packages/ruby.scm                              |    4 +-
 gnu/packages/rust.scm                              |   68 +-
 gnu/packages/scheme.scm                            |   29 +-
 gnu/packages/security-token.scm                    |    6 +-
 gnu/packages/shells.scm                            |    4 +-
 gnu/packages/shellutils.scm                        |    6 +-
 gnu/packages/speech.scm                            |   34 +
 gnu/packages/statistics.scm                        |  326 ++++--
 gnu/packages/suckless.scm                          |   30 +-
 gnu/packages/terminals.scm                         |    4 +-
 gnu/packages/video.scm                             |   12 +-
 gnu/packages/vpn.scm                               |    6 +-
 gnu/packages/web.scm                               |   16 +-
 gnu/packages/wm.scm                                |   12 +-
 gnu/packages/xdisorg.scm                           |    6 +-
 gnu/packages/xorg.scm                              |    4 +-
 gnu/packages/zile.scm                              |   82 +-
 gnu/packages/zip.scm                               |    4 +-
 gnu/services/cuirass.scm                           |   19 +-
 gnu/services/desktop.scm                           |    5 +
 gnu/services/web.scm                               |   96 +-
 gnu/system/grub.scm                                |   17 +-
 guix/build-system/cargo.scm                        |    7 +-
 guix/build-system/{cmake.scm => ocaml.scm}         |   93 +-
 guix/build/cargo-build-system.scm                  |   22 +-
 guix/build/make-bootstrap.scm                      |    5 +-
 guix/build/ocaml-build-system.scm                  |  119 ++
 guix/build/syscalls.scm                            |    6 +-
 guix/gexp.scm                                      |   18 +-
 guix/git-download.scm                              |   30 +-
 guix/gnu-maintenance.scm                           |    8 +-
 guix/grafts.scm                                    |   90 +-
 guix/import/crate.scm                              |   16 +-
 guix/import/elpa.scm                               |   10 +-
 guix/import/utils.scm                              |   14 +-
 guix/scripts/archive.scm                           |    3 +-
 guix/scripts/copy.scm                              |  207 ++++
 guix/scripts/graph.scm                             |   21 +
 guix/scripts/hash.scm                              |    5 +-
 guix/scripts/offload.scm                           |  154 +--
 guix/ssh.scm                                       |  226 ++++
 guix/ui.scm                                        |   10 +-
 nix/libstore/build.cc                              |   13 +-
 po/guix/POTFILES.in                                |    1 +
 tests/crate.scm                                    |    3 +-
 tests/gexp.scm                                     |   12 +-
 tests/graph.scm                                    |   14 +-
 160 files changed, 3908 insertions(+), 13422 deletions(-)
 delete mode 100644 build-aux/hydra/demo-os.scm
 delete mode 100644 doc/emacs.texi
 delete mode 100644 emacs/guix-about.el
 delete mode 100644 emacs/guix-backend.el
 delete mode 100644 emacs/guix-base.el
 delete mode 100644 emacs/guix-buffer.el
 delete mode 100644 emacs/guix-build-log.el
 delete mode 100644 emacs/guix-command.el
 delete mode 100644 emacs/guix-config.el.in
 delete mode 100644 emacs/guix-devel.el
 delete mode 100644 emacs/guix-entry.el
 delete mode 100644 emacs/guix-external.el
 delete mode 100644 emacs/guix-geiser.el
 delete mode 100644 emacs/guix-guile.el
 delete mode 100644 emacs/guix-help-vars.el
 delete mode 100644 emacs/guix-helper.scm.in
 delete mode 100644 emacs/guix-history.el
 delete mode 100644 emacs/guix-hydra-build.el
 delete mode 100644 emacs/guix-hydra-jobset.el
 delete mode 100644 emacs/guix-hydra.el
 delete mode 100644 emacs/guix-info.el
 delete mode 100644 emacs/guix-init.el
 delete mode 100644 emacs/guix-license.el
 delete mode 100644 emacs/guix-list.el
 delete mode 100644 emacs/guix-location.el
 delete mode 100644 emacs/guix-main.scm
 delete mode 100644 emacs/guix-messages.el
 delete mode 100644 emacs/guix-pcomplete.el
 delete mode 100644 emacs/guix-popup.el
 delete mode 100644 emacs/guix-prettify.el
 delete mode 100644 emacs/guix-profiles.el
 delete mode 100644 emacs/guix-read.el
 delete mode 100644 emacs/guix-ui-generation.el
 delete mode 100644 emacs/guix-ui-license.el
 delete mode 100644 emacs/guix-ui-location.el
 delete mode 100644 emacs/guix-ui-package.el
 delete mode 100644 emacs/guix-ui-system-generation.el
 delete mode 100644 emacs/guix-ui.el
 delete mode 100644 emacs/guix-utils.el
 delete mode 100644 emacs/local.mk
 create mode 100644 gnu/packages/idris.scm
 create mode 100644 
gnu/packages/patches/chicken-CVE-2016-6830+CVE-2016-6831.patch
 create mode 100644 gnu/packages/patches/libpng-CVE-2016-10087.patch
 create mode 100644 gnu/packages/patches/multiqc-fix-git-subprocess-error.patch
 create mode 100644 gnu/packages/patches/ocaml-Add-a-.file-directive.patch
 delete mode 100644 
gnu/packages/patches/python-dendropy-exclude-failing-tests.patch
 delete mode 100644 gnu/packages/patches/slock-CVE-2016-6866.patch
 copy guix/build-system/{cmake.scm => ocaml.scm} (62%)
 create mode 100644 guix/build/ocaml-build-system.scm
 create mode 100644 guix/scripts/copy.scm
 create mode 100644 guix/ssh.scm



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