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01/01: gnu: coda: Remove bundled libraries.
From: |
Ludovic Courtès |
Subject: |
01/01: gnu: coda: Remove bundled libraries. |
Date: |
Tue, 25 Oct 2016 12:56:47 +0000 (UTC) |
civodul pushed a commit to branch master
in repository guix.
commit 4b12fe5caba259bbf32865001c94a1de14965c66
Author: Thomas Danckaert <address@hidden>
Date: Tue Oct 25 10:56:46 2016 +0200
gnu: coda: Remove bundled libraries.
* gnu/packages/maths.scm (coda): Remove bundled libraries.
[source]: Add patch and snippet to remove bundled zlib, pcre and expat.
[inputs]: Add system zlib, pcre and expat.
* gnu/packages/patches/coda-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <address@hidden>
---
gnu/local.mk | 1 +
gnu/packages/maths.scm | 14 ++++++-
gnu/packages/patches/coda-use-system-libs.patch | 46 +++++++++++++++++++++++
3 files changed, 59 insertions(+), 2 deletions(-)
diff --git a/gnu/local.mk b/gnu/local.mk
index 51849f4..4ffd37a 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -484,6 +484,7 @@ dist_patch_DATA =
\
%D%/packages/patches/clucene-pkgconfig.patch \
%D%/packages/patches/clx-remove-demo.patch \
%D%/packages/patches/cmake-fix-tests.patch \
+ %D%/packages/patches/coda-use-system-libs.patch \
%D%/packages/patches/cpio-CVE-2016-2037.patch \
%D%/packages/patches/cpufrequtils-fix-aclocal.patch \
%D%/packages/patches/cracklib-CVE-2016-6318.patch \
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 2928cb6..1b43bda 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -123,18 +123,28 @@ interactive dialogs to guide them.")
(uri (string-append "https://github.com/stcorp/coda/releases/download/"
version "/coda-" version ".tar.gz"))
(sha256
- (base32 "04b9l3wzcix0mnfq77mwnil6cbr8h2mki8myvy0lzn236qcwaq1h"))))
+ (base32 "04b9l3wzcix0mnfq77mwnil6cbr8h2mki8myvy0lzn236qcwaq1h"))
+ (patches (search-patches "coda-use-system-libs.patch"))
+ (modules '((guix build utils)))
+ (snippet
+ ;; Make sure we don't use the bundled software.
+ '(for-each (lambda (d)
+ (delete-file-recursively (string-append "libcoda/" d)))
+ '("zlib" "pcre" "expat")))))
(native-inputs
`(("fortran" ,gfortran)
("python" ,python)
("python-numpy" ,python-numpy)))
(inputs
`(("zlib" ,zlib)
+ ("pcre" ,pcre)
+ ("expat" ,expat)
("hdf4" ,hdf4-alt)
("hdf5" ,hdf5)))
(build-system gnu-build-system)
(arguments
- '(#:configure-flags '("--with-hdf4" "--with-hdf5" "--enable-python")))
+ '(#:configure-flags '("--with-hdf4" "--with-hdf5" "--enable-python"
+ "LIBS= -lz -lpcre -lexpat")))
(synopsis "A common interface to various earth observation data formats")
(description
"The Common Data Access toolbox (CODA) provides a set of interfaces for
diff --git a/gnu/packages/patches/coda-use-system-libs.patch
b/gnu/packages/patches/coda-use-system-libs.patch
new file mode 100644
index 0000000..fbf8441
--- /dev/null
+++ b/gnu/packages/patches/coda-use-system-libs.patch
@@ -0,0 +1,46 @@
+Remove dependencies on bundled zlib, pcre and expat.
+
+diff --git a/Makefile.in b/Makefile.in
+index 4360a26..80f9f59 100644
+--- a/Makefile.in
++++ b/Makefile.in
+@@ -210,8 +210,7 @@ coda_matlab_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \
+ @BUILD_MATLAB_TRUE@@SUBPACKAGE_MODE_FALSE@ -rpath \
+ @BUILD_MATLAB_TRUE@@SUBPACKAGE_MODE_FALSE@ $(matlabmexexecdir)
+ am__DEPENDENCIES_1 =
+-libcoda_la_DEPENDENCIES = @LTLIBOBJS@ libexpat_internal.la \
+- libpcre_internal.la libz_internal.la $(am__DEPENDENCIES_1) \
++libcoda_la_DEPENDENCIES = @LTLIBOBJS@ $(am__DEPENDENCIES_1) \
+ $(am__DEPENDENCIES_1)
+ am__libcoda_la_SOURCES_DIST = libcoda/coda-ascbin-cursor.c \
+ libcoda/coda-ascbin.h libcoda/coda-ascii-cursor.c \
+@@ -306,8 +305,7 @@ libcoda_la_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC
$(AM_LIBTOOLFLAGS) \
+ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+ $(libcoda_la_LDFLAGS) $(LDFLAGS) -o $@
+ @address@hidden = -rpath $(libdir)
+-am__DEPENDENCIES_2 = @LTLIBOBJS@ libexpat_internal.la \
+- libpcre_internal.la libz_internal.la $(am__DEPENDENCIES_1) \
++am__DEPENDENCIES_2 = @LTLIBOBJS@ $(am__DEPENDENCIES_1) \
+ $(am__DEPENDENCIES_1)
+ libcoda_internal_la_DEPENDENCIES = $(am__DEPENDENCIES_2)
+ am__libcoda_internal_la_SOURCES_DIST = libcoda/coda-ascbin-cursor.c \
+@@ -898,8 +896,8 @@ INSTALL_DATA_HOOK_TARGETS = $(am__append_1)
+ UNINSTALL_HOOK_TARGETS =
+ CLEAN_LOCAL_TARGETS = $(am__append_11)
+ ALL_LOCAL_TARGETS =
address@hidden@noinst_LTLIBRARIES = libcoda_internal.la libexpat_internal.la
libpcre_internal.la libz_internal.la
address@hidden@noinst_LTLIBRARIES = libcoda_internal.la libexpat_internal.la
libpcre_internal.la libz_internal.la
address@hidden@noinst_LTLIBRARIES = libcoda_internal.la
address@hidden@noinst_LTLIBRARIES = libcoda_internal.la
+
+ # libraries (+ related files)
+ @address@hidden = libcoda.la
+@@ -1048,7 +1046,7 @@ libcoda_hdf5_files = \
+
+ libcoda_la_CPPFLAGS = -Ilibcoda/expat -I$(srcdir)/libcoda/expat
-Ilibcoda/pcre -I$(srcdir)/libcoda/pcre -Ilibcoda/zlib -I$(srcdir)/libcoda/zlib
$(AM_CPPFLAGS)
+ libcoda_la_LDFLAGS = -no-undefined -version-info
$(LIBCODA_CURRENT):$(LIBCODA_REVISION):$(LIBCODA_AGE)
+-libcoda_la_LIBADD = @LTLIBOBJS@ libexpat_internal.la libpcre_internal.la
libz_internal.la $(HDF4LIBS) $(HDF5LIBS)
++libcoda_la_LIBADD = @LTLIBOBJS@ $(HDF4LIBS) $(HDF5LIBS)
+ libcoda_internal_la_SOURCES = libcoda/coda-ascbin-cursor.c \
+ libcoda/coda-ascbin.h libcoda/coda-ascii-cursor.c \
+ libcoda/coda-ascii-internal.h libcoda/coda-ascii.c \