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01/01: gnu: python2-dendropy: Fix tests.
From: |
Ben Woodcroft |
Subject: |
01/01: gnu: python2-dendropy: Fix tests. |
Date: |
Sat, 8 Oct 2016 11:40:31 +0000 (UTC) |
benwoodcroft pushed a commit to branch master
in repository guix.
commit 9602e3cce95264d563804d372f44a0d88bad3e9f
Author: Ben Woodcroft <address@hidden>
Date: Sat Oct 8 21:33:43 2016 +1000
gnu: python2-dendropy: Fix tests.
* gnu/packages/bioinformatics.scm (python2-dendropy)[source]: Use unpatched
source.
[arguments]: Use nose to run tests.
[native-inputs]: Add python2-nose.
---
gnu/packages/bioinformatics.scm | 18 ++++++++++++++++++
1 file changed, 18 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 76e6c31..02ed8da 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1972,7 +1972,25 @@ trees (phylogenies) and characters.")
(let ((base (package-with-python2 (strip-python2-variant python-dendropy))))
(package
(inherit base)
+ ;; Do not use same source as 'python-dendropy' because the patched
+ ;; failing tests do not occur on Python 2.
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "DendroPy" (package-version base)))
+ (sha256
+ (base32
+ "1jfz7gp18wph311w1yygbvjanb3n5mdqal439bb6myw41dwb5m63"))))
+ (arguments
+ `(#:python ,python-2
+ #:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ ;; There is currently a test failure that only happens on some
+ ;; systems, and only using "setup.py test"
+ (lambda _ (zero? (system* "nosetests")))))))
(native-inputs `(("python2-setuptools" ,python2-setuptools)
+ ("python2-nose" ,python2-nose)
,@(package-native-inputs base))))))