[Gsrc-commit] trunk r8648: update moods to 1.9.4.1

[Carl Hansen]

------------------------------------------------------------
revno: 8648
revision-id: carlhansen1234@gmail.com-20221011202425-dzf5wqtrd72x5dpj
parent: carlhansen1234@gmail.com-20221011000824-zocrl0mo8kgdw906
committer: carlhansen1234@gmail.com
branch nick: trunk
timestamp: Tue 2022-10-11 13:24:25 -0700
message:
  update moods to 1.9.4.1
modified:
  pkg/bio/moods/Makefile         makefile-20160617195624-kwz1a09vkg4le6fu-128
  pkg/bio/moods/sha256sums       sha256sums-20160617195624-kwz1a09vkg4le6fu-129

=== modified file 'pkg/bio/moods/Makefile'
--- a/pkg/bio/moods/Makefile    2016-06-17 19:57:40 +0000
+++ b/pkg/bio/moods/Makefile    2022-10-11 20:24:25 +0000
@@ -18,31 +18,36 @@
 NAME = MOODS
 GARNAME = moods
 UPSTREAMNAME = MOODS
-GARVERSION = 1.0.2
+GARVERSION = 1.9.4.1
 HOME_URL = http://www.cs.helsinki.fi/group/pssmfind/
 DESCRIPTION = Motif occurrence detection suite
 define BLURB
+Motif occurrence detection suite
 MOODS is a library containing algorithms for matching position weight
 matrices (PWM) against DNA sequences.
 endef
-LICENSE = GPL3
+LICENSE = dual-licenced under GPL version 3 license and Biopython license
 CITE = doi:10.1093/bioinformatics/btp554
 
+# Note: a python2 program
+# also installable as
+# pip install --user MOODS-python
+
 ######################################################################
+#https://github.com/jhkorhonen/MOODS/releases/download/v1.9.4.1/MOODS-python-1.9.4.1.tar.gz
 
-MASTER_SITES = http://www.cs.helsinki.fi/
-MASTER_SUBDIR = group/pssmfind/
-DISTNAME = $(UPSTREAMNAME)_$(GARVERSION)
+MASTER_SITES = https://github.com/
+MASTER_SUBDIR = jhkorhonen/MOODS/releases/download/v$(GARVERSION)/
+DISTNAME = $(UPSTREAMNAME)-python-$(GARVERSION)
 DISTFILES = $(DISTNAME).tar.gz
-WORKSRC = $(WORKDIR)/$(UPSTREAMNAME)
-CONFIGURE_SCRIPTS = $(WORKSRC)/perl/Makefile.PL
-BUILD_SCRIPTS = $(WORKSRC)/src/Makefile $(WORKSRC)/python/setup.py \
-       $(WORKSRC)/perl/Makefile
-INSTALL_SCRIPTS = bin lib $(WORKSRC)/python/setup.py \
-       $(WORKSRC)/perl/Makefile
+
+
+# NOTE:  this python2 relic is annoying, I haven't figured this out... on your 
own. Use pip
+BUILD_SCRIPTS =  $(WORKSRC)/setup.py 
+INSTALL_SCRIPTS = bin lib $(WORKSRC)/python/setup.py  $(WORKSRC)/perl/Makefile
 
 BUILDDEPS =
-LIBDEPS = python2
+LIBDEPS = #python2
 
 PYTHON ?= $(prefix)/bin/python2
 
@@ -52,9 +57,9 @@
 include config.mk
 
 install-bin:
-       $(INSTALL_BIN) $(WORKSRC)/src/find_pssm_dna
+       $(INSTALL_BIN) $(WORKSRC)/find_pssm_dna
        $(MAKECOOKIE)
 
 install-lib:
-       $(INSTALL_LIB) $(WORKSRC)/src/libpssm.a
+       $(INSTALL_LIB) $(WORKSRC)/libpssm.a
        $(MAKECOOKIE)

=== modified file 'pkg/bio/moods/sha256sums'
--- a/pkg/bio/moods/sha256sums  2016-06-17 19:57:40 +0000
+++ b/pkg/bio/moods/sha256sums  2022-10-11 20:24:25 +0000
@@ -1,1 +1,1 @@
-a3bf43a6e0ef5d48fc85e3246021b7b007e52648405fd187aeaa712d2dbf3dfd  
download/MOODS_1.0.2.tar.gz
+7fd4d634bc2258421859d720afb9e38b4015b92d1ffc7aaeeb5422ce8b26d65e  
download/MOODS-python-1.9.4.1.tar.gz