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[Gsrc-commit] trunk r8624: update samtools to 1.16.1
From: |
Carl Hansen |
Subject: |
[Gsrc-commit] trunk r8624: update samtools to 1.16.1 |
Date: |
Tue, 4 Oct 2022 14:04:20 -0400 (EDT) |
User-agent: |
Bazaar (2.7.0dev1) |
------------------------------------------------------------
revno: 8624
revision-id: carlhansen1234@gmail.com-20221004180416-lw4dqqcogpeqrv76
parent: carlhansen1234@gmail.com-20221004180355-w0dbc8f32z4v016t
committer: carlhansen1234@gmail.com
branch nick: trunk
timestamp: Tue 2022-10-04 11:04:16 -0700
message:
update samtools to 1.16.1
modified:
pkg/bio/samtools/Makefile makefile-20160617195624-kwz1a09vkg4le6fu-176
pkg/bio/samtools/sha256sums sha256sums-20160617195624-kwz1a09vkg4le6fu-177
=== modified file 'pkg/bio/samtools/Makefile'
--- a/pkg/bio/samtools/Makefile 2021-10-27 07:04:10 +0000
+++ b/pkg/bio/samtools/Makefile 2022-10-04 18:04:16 +0000
@@ -1,5 +1,5 @@
# Copyright © 2014 Brandon Invergo <brandon@invergo.net>
-# Copyright © 2017, 2021 Carl Hansen <carlhansen@gnu.org>
+# Copyright © 2017, 2021, 2022 Carl Hansen <carlhansen@gnu.org>
#
# This file is part of BioSRC and GSRC. the GNU Source Release Collection.
# http://www.gnu.org/software/gsrc
@@ -22,7 +22,7 @@
NAME = SAMtools
GARNAME = samtools
-GARVERSION = 1.14
+GARVERSION = 1.16.1
HOME_URL = http://https://www.htslib.org/download/
DESCRIPTION = Utilities for manipulating alignments in the SAM format
define BLURB
@@ -39,7 +39,9 @@
MASTER_SITES = $(MASTER_GITHUB)
MASTER_SUBDIR = $(GARNAME)/$(GARNAME)/releases/download/$(GARVERSION)/
DISTFILES = $(DISTNAME).tar.bz2
+CONFIGURE_SCRIPTS =$(WORKSRC)/configure
#BUILD_SCRIPTS = $(WORKSRC)/Makefile
+#BUILD_SCRIPTS = it
#INSTALL_SCRIPTS = $(WORKSRC)/Makefile lib headers #programs lib headers man
BUILDDEPS =
@@ -49,7 +51,12 @@
include ../../../gar/gar.lib/auto.mk
include config.mk
-export DESTDIR= $(packageprefix)/packages/$(PACKAGENAME)
+
+#export DESTDIR=$(packageprefix)/packages/$(PACKAGENAME)
+
+inf:
+ echo $(WORKSRC) $(WORKOBJ)
+
pre-install: build
mkdir -p $(packageprefix)/packages/$(PACKAGENAME)
=== modified file 'pkg/bio/samtools/sha256sums'
--- a/pkg/bio/samtools/sha256sums 2021-10-27 07:04:10 +0000
+++ b/pkg/bio/samtools/sha256sums 2022-10-04 18:04:16 +0000
@@ -1,1 +1,1 @@
-9341dabaa98b0ea7d60fd47e42af25df43a7d3d64d8e654cdf852974546b7d74
download/samtools-1.14.tar.bz2
+2fa0a25f78594cf23d07c9d32d5060a14f1c5ee14d7b0af7a8a71abc9fdf1d07
download/samtools-1.16.1.tar.bz2
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