[debbugs-tracker] bug#32682: closed ([PATCH] gnu: Add r-absfiltergsea.)

[GNU bug Tracking System]

Your message dated Tue, 2 Oct 2018 16:24:16 -0400
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and subject line Re: [bug#32682] [PATCH] gnu: Add r-absfiltergsea.
has caused the debbugs.gnu.org bug report #32682,
regarding [PATCH] gnu: Add r-absfiltergsea.
to be marked as done.

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32682: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=32682
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-absfiltergsea.
>
>
>
>
> Date: 
>
> Mon, 10 Sep 2018 16:05:41 +0200
>
>
>
>
> gnu/packages/bioinformatics.scm (r-absfiltergsea): New variable.
> ---
>  gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
>  1 file changed, 27 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 6580cac53..9c01cb86f 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -13504,3 +13504,30 @@ reference transcripts provided in a annotation file 
> (also in GTF/GFF3 format).
>         (list
>          license:expat                   ;license for gffcompare
>          license:artistic2.0)))))        ;license for gclib
> +
> +(define-public r-absfiltergsea
> +  (package
> +    (name "r-absfiltergsea")
> +    (version "1.5.1")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (cran-uri "AbsFilterGSEA" version))
> +       (sha256
> +        (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"))))
> +    (properties `((upstream-name . "AbsFilterGSEA")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     `(("r-biobase" ,r-biobase)
> +       ("r-deseq" ,r-deseq)
> +       ("r-limma" ,r-limma)
> +       ("r-rcpp" ,r-rcpp)
> +       ("r-rcpparmadillo" ,r-rcpparmadillo)))
> +    (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/";)
> +    (synopsis "Improved false positive control of gene-permuting with absolute 
> filtering")
> +    (description
> +     "This package provides a function that performs gene-permuting of a 
> gene-set
> +enrichment analysis (GSEA) calculation with or without the absolute filtering.
> +  Without filtering, users can perform (original) two-tailed or one-tailed
> +absolute GSEA.")
> +    (license license:gpl2)))
> -- 
> 2.17.1
>
>
>
>
> --- End Message ---

--- Begin Message --- Subject: Re: [bug#32682] [PATCH] gnu: Add r-absfiltergsea. Date: Tue, 2 Oct 2018 16:24:16 -0400 User-agent: Mutt/1.10.1 (2018-07-13)

On Mon, Sep 10, 2018 at 04:05:41PM +0200, pimi wrote:
> gnu/packages/bioinformatics.scm (r-absfiltergsea): New variable.

Thanks! Pushed as 0f1622220a39a620854b0a268793e262746d460a

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