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GNU Parallel Bug Reports trouble with space after filename substitution


From: Rob Sargent
Subject: GNU Parallel Bug Reports trouble with space after filename substitution
Date: Mon, 05 Jan 2015 11:59:01 -0700
User-agent: Mozilla/5.0 (X11; Linux x86_64; rv:31.0) Gecko/20100101 Thunderbird/31.3.0

I'm getting a space immediately following the {//} substitution, when I would like to add a filename to the dirname from input.

Since I'm not sure how you're displaying this email, please note there is a space character preceding the "./peakdector"s. So maybe I'm getting a space and a dot I don't want?

Any help appreciated,
rjs


parallel --version
GNU parallel 20141122
Copyright (C) 2007,2008,2009,2010,2011,2012,2013,2014 Ole Tange and Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
GNU parallel comes with no warranty.


 parallel --verbose --joblog ba.ll --jobs 6 java -cp . BillAuer {1} 9 {2} " >  {//}/peakdector.{2}" :::: pvalFilelist ::: 15 20 25 30 35 40
java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02/cumulative.pval 9 15  >  /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02 ./peakdector.15
java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02/cumulative.pval 9 20  >  /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02 ./peakdector.20
java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02/cumulative.pval 9 25  >  /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02 ./peakdector.25
java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02/cumulative.pval 9 30  >  /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02 ./peakdector.30
java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02/cumulative.pval 9 35  >  /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02 ./peakdector.35
java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02/cumulative.pval 9 40  >  /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02 ./peakdector.40
/bin/bash: /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02: Is a directory
java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/para1/cumulative.pval 9 15  >  /raid3/TITP/CLL/sgs/dist/ped6228/chr7/para1 ./peakdector.15
/bin/bash: /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02: Is a directory
java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/para1/cumulative.pval 9 20  >  /raid3/TITP/CLL/sgs/dist/ped6228/chr7/para1 ./peakdector.20
/bin/bash: /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02: Is a directory
java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/para1/cumulative.pval 9 25  >  /raid3/TITP/CLL/sgs/dist/ped6228/chr7/para1 ./peakdector.25


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