If you use ~/.emacs instead of ~.emacs.d/init.el, and happen to compile .emacs, Emacs loads .emacs.elc (as it has always done), but the native compiler does *not* know how to compile it (because it does not know how to locate its source), so it gives a warning:
022-11-18 02:54:01+0100 Warning (comp): Cannot look up eln file as no source file was found for d:/Home/.emacs.elc
and then it assigns the user-init-file to the native-compiled warnings.el,
"d:/Home/.emacs.d/native/29.0.50-a4a10996/warnings-28e75f4d-02da775e.eln"
which now, with the fix for bug#59334, ends up pointing to warnings.el:
ELISP> user-init-file
"d:/Devel/emacs/repo/trunk/lisp/emacs-lisp/warnings.el"